src/main/java/nl/andrewlalis/Main.java

@@ -6,6 +6,8 @@ import nl.andrewlalis.model.Student;
 import nl.andrewlalis.model.StudentTeam;
 import nl.andrewlalis.ui.control.command.CommandExecutor;
 import nl.andrewlalis.ui.control.command.Executable;
+import nl.andrewlalis.ui.control.command.executables.ArchiveRepos;
+import nl.andrewlalis.ui.control.command.executables.ReadStudentsFileToDB;
 import nl.andrewlalis.ui.view.InitializerApp;
 import nl.andrewlalis.util.CommandLine;
 import nl.andrewlalis.util.Logging;
@@ -38,18 +40,26 @@ public class Main {
             logger.severe("Unable to save log to file.");
         }
 
+        // Command executor which will be used by all actions the user can do.
         CommandExecutor executor = new CommandExecutor();
+
+        // Initialize User Interface.
+        InitializerApp app = new InitializerApp(executor);
+        app.begin();
+
+        Database db = new Database("database/initializer.sqlite");
+        db.initialize();
+
         executor.registerCommand("test", args1 -> {
             System.out.println("TESTING");
             return true;
         });
+        executor.registerCommand("readstudents", new ReadStudentsFileToDB(db));
+        executor.registerCommand("archiveall", new ArchiveRepos());
 
-        // Initialize User Interface.
+        logger.info("GithubManager for Github Repositories in Educational Organizations. Program initialized.");
-        InitializerApp app = new InitializerApp(executor);
 
-        app.begin();
 
-        logger.info("GithubManager for Github Repositories in Educational Organizations.");
 
         // Get studentTeams from CSV file.
 //        List<StudentTeam> studentTeams = getStudentTeamsFromCSV(userOptions.get("input"), Integer.parseInt(userOptions.get("teamsize")));
@@ -68,17 +78,6 @@ public class Main {
         } catch (Exception e) {
             e.printStackTrace();
         }
-
-        // Initialize database.
-//        Database db = new Database("database/initializer.sqlite");
-//        db.initialize();
-//        for (StudentTeam team : studentTeams) {
-//            for (Student student : team.getStudents()) {
-//                db.storeStudent(student);
-//            }
-//        }
-
-
     }
 
 

src/main/java/nl/andrewlalis/git_api/GithubManager.java

@@ -5,6 +5,7 @@ import com.fasterxml.jackson.databind.node.ObjectNode;
 import jdk.nashorn.internal.ir.annotations.Ignore;
 import nl.andrewlalis.model.Student;
 import nl.andrewlalis.model.StudentTeam;
+import nl.andrewlalis.model.TATeam;
 import org.apache.http.HttpResponse;
 import org.apache.http.client.methods.HttpPatch;
 import org.apache.http.entity.StringEntity;
@@ -26,18 +27,6 @@ public class GithubManager {
      * The assignments repository where students will get assignments from.
      */
     private GHRepository assignmentsRepo;
-    private String assignmentsRepoName;
-
-    /**
-     * The name of the team which contains all teaching assistants.
-     */
-    private String teachingAssistantsTeamName;
-
-    /**
-     * The prefix used to prepend the names of student repositories.
-     * Should ideally contain the current school year.
-     */
-    private String studentRepoPrefix;
 
     /**
      * Github object for API interactions.
@@ -54,12 +43,8 @@ public class GithubManager {
         logger.setParent(Logger.getGlobal());
     }
 
-    public GithubManager(String organizationName, String accessToken, String assignmentsRepo, String teachingAssistantsTeamName, String studentRepoPrefix) {
+    public GithubManager(String organizationName, String accessToken) {
-        this.assignmentsRepoName = assignmentsRepo;
-        this.teachingAssistantsTeamName = teachingAssistantsTeamName;
-        this.studentRepoPrefix = studentRepoPrefix;
         this.accessToken = accessToken;
-
         try {
             this.github = GitHub.connectUsingOAuth(accessToken);
             this.organization = this.github.getOrganization(organizationName);
@@ -80,57 +65,59 @@ public class GithubManager {
      * - adds students to repository
      * - adds all students to assignments repository.
      * @param studentTeams The list of student studentTeams.
+     * @param teamAll The team of all teaching assistants.
+     * @param assignmentsRepoName The name of the assignments repo.
      * @throws Exception If an error occurs while initializing the github repositories.
      */
-    public void initializeGithubRepos(List<StudentTeam> studentTeams) throws Exception {
+    public void initializeGithubRepos(List<StudentTeam> studentTeams, TATeam teamAll, String assignmentsRepoName) throws Exception {
-        GHTeam teamAll = this.organization.getTeamByName(this.teachingAssistantsTeamName);
+        this.setupAssignmentsRepo(assignmentsRepoName, "fuck the police", teamAll);
-
-        this.setupAssignmentsRepo(teamAll);
 
         StudentTeam t = new StudentTeam();
         Student s = new Student(3050831, "Andrew Lalis", "andrewlalisofficial@gmail.com", "andrewlalis", null);
         t.addMember(s);
         t.setId(42);
 
-        this.setupStudentTeam(t, teamAll);
+        this.setupStudentTeam(t, teamAll, "advoop_2018");
+        // TODO: Finish this method.
     }
 
     /**
      * Sets up the organization's assignments repository, and grants permissions to all teaching assistants.
+     * @param assignmentsRepoName The name of the assignments repository.
+     * @param description The description of the repository.
      * @param allTeachingAssistants A team consisting of all teaching assistants.
      * @throws IOException If an HTTP request failed.
      */
-    @SuppressWarnings("deprecation")
+    private void setupAssignmentsRepo(String assignmentsRepoName, String description, TATeam allTeachingAssistants) throws IOException {
-    private void setupAssignmentsRepo(GHTeam allTeachingAssistants) throws IOException {
         // Check if the repository already exists.
-        GHRepository existingRepo = this.organization.getRepository(this.assignmentsRepoName);
+        GHRepository existingRepo = this.organization.getRepository(assignmentsRepoName);
         if (existingRepo != null) {
             existingRepo.delete();
             logger.fine("Deleted pre-existing assignments repository.");
         }
 
         // Create the repository.
-        GHCreateRepositoryBuilder builder = this.organization.createRepository(this.assignmentsRepoName);
+        GHCreateRepositoryBuilder builder = this.organization.createRepository(assignmentsRepoName);
         builder.description("Assignments repository for Advanced Object Oriented Programming");
         builder.wiki(false);
         builder.issues(true);
         builder.private_(false); // TODO: Make this true for production.
-        builder.team(allTeachingAssistants);
+        builder.team(allTeachingAssistants.getGithubTeam());
         builder.gitignoreTemplate("Java");
         this.assignmentsRepo = builder.create();
         logger.info("Created assignments repository.");
 
-        // Protect the master branch.
+        this.assignmentsRepo = this.createRepository(assignmentsRepoName, allTeachingAssistants, description, false, true, false);
-        GHBranchProtectionBuilder protectionBuilder = this.assignmentsRepo.getBranch("master").enableProtection();
+
-        protectionBuilder.includeAdmins(false);
+        if (this.assignmentsRepo == null) {
-        protectionBuilder.restrictPushAccess();
+            logger.severe("Could not create assignments repository.");
-        protectionBuilder.teamPushAccess(allTeachingAssistants);
+            return;
-        protectionBuilder.addRequiredChecks("ci/circleci");
+        }
-        protectionBuilder.enable();
+
-        logger.fine("Protected master branch of assignments repository.");
+        this.protectMasterBranch(this.assignmentsRepo, allTeachingAssistants);
 
         // Grant all teaching assistants write access.
-        allTeachingAssistants.add(this.assignmentsRepo, GHOrganization.Permission.ADMIN);
+        allTeachingAssistants.getGithubTeam().add(this.assignmentsRepo, GHOrganization.Permission.ADMIN);
         logger.fine("Gave admin rights to all teaching assistants in team: " + allTeachingAssistants.getName());
     }
 
@@ -139,44 +126,27 @@ public class GithubManager {
      * repository as well.
      * @param team The student team to set up.
      * @param taTeam The team of teaching assistants that is responsible for these students.
+     * @param prefix The prefix to append to the front of the repo name.
      * @throws IOException If an HTTP request fails.
      */
-    @SuppressWarnings("deprecation")
+    private void setupStudentTeam(StudentTeam team, TATeam taTeam, String prefix) throws IOException {
-    private void setupStudentTeam(StudentTeam team, GHTeam taTeam) throws IOException {
+        // First check that the assignments repo exists, otherwise no invitations can be sent.
-        String teamRepoName = team.generateUniqueName(this.studentRepoPrefix);
+        if (this.assignmentsRepo == null) {
-
+            logger.warning("Assignments repository must be created before student repositories.");
-        Student[] students = team.getStudents();
+            return;
-        StringBuilder description = new StringBuilder("Group ");
-        description.append(team.getId()).append(": ");
-
-        for (Student s : students) {
-            description.append(s.getName()).append(' ');
         }
 
-        GHCreateRepositoryBuilder builder = this.organization.createRepository(teamRepoName);
+        GHRepository repo = this.createRepository(team.generateUniqueName(prefix), taTeam, team.generateRepoDescription(), false, true, false);
-        builder.team(taTeam);
-        builder.wiki(false);
-        builder.issues(true);
-        builder.description(description.toString());
-        builder.gitignoreTemplate("Java");
-        builder.private_(false); // TODO: Change this to true for production
-        GHRepository repo = builder.create();
-        logger.info("Created repository: " + repo.getName());
 
-        // Protect the master branch.
+        if (repo == null) {
-        GHBranchProtectionBuilder protectionBuilder = repo.getBranch("master").enableProtection();
+            logger.severe("Repository for student team " + team.getId() + " could not be created.");
-        protectionBuilder.includeAdmins(false);
+            return;
-        protectionBuilder.teamPushAccess(taTeam);
+        }
-        protectionBuilder.addRequiredChecks("ci/circleci");
-        protectionBuilder.enable();
-        logger.fine("Protected master branch of repository: " + repo.getName());
 
-        // Create development branch.
+        this.protectMasterBranch(repo, taTeam);
-        String sha1 = repo.getBranch(repo.getDefaultBranch()).getSHA1();
+        this.createDevelopmentBranch(repo);
-        repo.createRef("refs/heads/development", sha1);
-        logger.fine("Created development branch of repository: " + repo.getName());
 
-        taTeam.add(repo, GHOrganization.Permission.ADMIN);
+        taTeam.getGithubTeam().add(repo, GHOrganization.Permission.ADMIN);
         logger.fine("Added team " + taTeam.getName() + " as admin to repository: " + repo.getName());
 
         List<GHUser> users = new ArrayList<>();
@@ -234,4 +204,68 @@ public class GithubManager {
         logger.info("Archived repository: " + repo.getFullName());
     }
 
+    /**
+     * Protects the master branch of a given repository, and gives admin rights to the given team.
+     * @param repo The repository to protect the master branch of.
+     * @param team The team which gets admin rights to the master branch.
+     */
+    @SuppressWarnings("deprecation")
+    private void protectMasterBranch(GHRepository repo, TATeam team) {
+        try {
+            GHBranchProtectionBuilder protectionBuilder = repo.getBranch("master").enableProtection();
+            protectionBuilder.includeAdmins(false);
+            protectionBuilder.restrictPushAccess();
+            protectionBuilder.teamPushAccess(team.getGithubTeam());
+            protectionBuilder.addRequiredChecks("ci/circleci");
+            protectionBuilder.enable();
+            logger.fine("Protected master branch of repository: " + repo.getName());
+        } catch (IOException e) {
+            e.printStackTrace();
+        }
+    }
+
+    /**
+     * Creates a development branch for the given repository.
+     * @param repo The repository to create a development branch for.
+     */
+    private void createDevelopmentBranch(GHRepository repo) {
+        try {
+            String sha1 = repo.getBranch(repo.getDefaultBranch()).getSHA1();
+            repo.createRef("refs/heads/development", sha1);
+            logger.fine("Created development branch of repository: " + repo.getName());
+        } catch (IOException e) {
+            logger.severe("Could not create development branch for repository: " + repo.getName() + '\n' + e.getMessage());
+            e.printStackTrace();
+        }
+    }
+
+    /**
+     * Creates a new github repository.
+     * @param name The name of the repository.
+     * @param taTeam The team to give admin rights.
+     * @param description The description of the repository.
+     * @param hasWiki Whether the repo has a wiki enabled.
+     * @param hasIssues Whether the repo has issues enabled.
+     * @param isPrivate Whether or not the repository is private.
+     * @return The repository that was created, or
+     */
+    private GHRepository createRepository(String name, TATeam taTeam, String description, boolean hasWiki, boolean hasIssues, boolean isPrivate){
+        try {
+            GHCreateRepositoryBuilder builder = this.organization.createRepository(name);
+            builder.team(taTeam.getGithubTeam());
+            builder.wiki(hasWiki);
+            builder.issues(hasIssues);
+            builder.description(description);
+            builder.gitignoreTemplate("Java");
+            builder.private_(isPrivate); // TODO: Change this to true for production
+            GHRepository repo = builder.create();
+            logger.fine("Created repository: " + repo.getName());
+            return repo;
+        } catch (IOException e) {
+            logger.severe("Could not create repository: " + name + '\n' + e.getMessage());
+            e.printStackTrace();
+            return null;
+        }
+    }
+
 }

src/main/java/nl/andrewlalis/model/StudentTeam.java

@@ -52,9 +52,22 @@ public class StudentTeam extends Team{
     public String generateUniqueName(String prefix) {
         StringBuilder sb = new StringBuilder(prefix);
         sb.append("_team_").append(this.id);
-        for (Student s : (Student[]) this.getMembers()) {
+        for (Student s : this.getStudents()) {
             sb.append('_').append(s.getNumber());
         }
         return sb.toString();
     }
+
+    /**
+     * Generates a description for the repository, based on the students' names and group number.
+     * @return A description for the students' repository.
+     */
+    public String generateRepoDescription() {
+        StringBuilder sb = new StringBuilder();
+        sb.append("Group ").append(this.id).append(": ");
+        for (Student s : this.getStudents()) {
+            sb.append(s.getName()).append(' ');
+        }
+        return sb.toString();
+    }
 }

src/main/java/nl/andrewlalis/model/TATeam.java

@@ -1,8 +1,7 @@
 package nl.andrewlalis.model;
 
-import com.fasterxml.jackson.annotation.JsonCreator;
+import org.kohsuke.github.GHOrganization;
-import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
+import org.kohsuke.github.GHTeam;
-import com.fasterxml.jackson.annotation.JsonProperty;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -25,6 +24,11 @@ public class TATeam {
      */
     private int id;
 
+    /**
+     * The Github team associated with this team.
+     */
+    private GHTeam githubTeam;
+
     /**
      * Constructs a team without any teaching assistant members.
      * @param name The name of the team.
@@ -58,4 +62,11 @@ public class TATeam {
         return this.name;
     }
 
+    public GHTeam getGithubTeam() {
+        return this.githubTeam;
+    }
+
+    public void setGithubTeam(GHTeam team) {
+        this.githubTeam = team;
+    }
 }

src/main/java/nl/andrewlalis/model/database/Database.java

@@ -1,9 +1,6 @@
 package nl.andrewlalis.model.database;
 
-import nl.andrewlalis.model.Person;
+import nl.andrewlalis.model.*;
-import nl.andrewlalis.model.Student;
-import nl.andrewlalis.model.TeachingAssistant;
-import nl.andrewlalis.model.Team;
 
 import java.sql.Connection;
 import java.sql.DriverManager;
@@ -24,8 +21,8 @@ public class Database {
     private static final int TEAM_TYPE_TA = 1;
     private static final int TEAM_TYPE_TA_ALL = 2;
 
-    private static final int TEAM_NONE = 0;
+    private static final int TEAM_NONE = 1000000;
-    private static final int TEAM_TA_ALL = 1;
+    private static final int TEAM_TA_ALL = 1000001;
 
     private static final int ERROR_TYPE_TEAM = 0;
     private static final int ERROR_TYPE_PERSON = 1;
@@ -157,6 +154,25 @@ public class Database {
         }
     }
 
+    /**
+     * Stores a list of student teams in the database.
+     * @param teams The list of teams to store.
+     * @return True if successful, or false if an error occurred.
+     */
+    public boolean storeStudentTeams(List<StudentTeam> teams) {
+        for (StudentTeam team : teams) {
+            if (!this.storeTeam(team, TEAM_TYPE_STUDENT)) {
+                return false;
+            }
+            for (Student student : team.getStudents()) {
+                if (!this.storeStudent(student, team.getId())) {
+                    return false;
+                }
+            }
+        }
+        return true;
+    }
+
     /**
      * Stores a student without a team.
      * @param student The student to store.

src/main/java/nl/andrewlalis/ui/control/OutputTextHandler.java

@@ -8,6 +8,9 @@ import java.util.Date;
 import java.util.logging.Handler;
 import java.util.logging.LogRecord;
 
+/**
+ * A custom handler for printing log messages to the user interface text output pane.
+ */
 public class OutputTextHandler extends Handler {
 
     /**

src/main/java/nl/andrewlalis/ui/control/command/CommandExecutor.java

@@ -1,5 +1,6 @@
 package nl.andrewlalis.ui.control.command;
 
+import java.util.Arrays;
 import java.util.HashMap;
 import java.util.Map;
 import java.util.logging.Logger;
@@ -33,6 +34,7 @@ public class CommandExecutor {
      */
     public void registerCommand(String commandName, Executable executable) {
         this.commands.put(commandName, executable);
+        logger.fine("Registered command: " + commandName);
     }
 
     /**
@@ -40,7 +42,7 @@ public class CommandExecutor {
      * @param commandString The String command and any arguments that go with it.
      */
     public void executeString(String commandString) {
-        String[] words = commandString.trim().toLowerCase().split(" ");
+        String[] words = commandString.trim().split(" ");
         if (words.length < 1) {
             logger.warning("No command supplied.");
             return;
@@ -50,9 +52,19 @@ public class CommandExecutor {
         if (words.length > 1) {
             System.arraycopy(words, 1, args, 0, words.length - 1);
         }
+        this.executeCommand(commandName, args);
+    }
+
+    /**
+     * Executes a command with the given name, and given arguments.
+     * @param commandName The name of the command. A command must be registered using registerCommand before it can be
+     *                    called here.
+     * @param args The list of arguments to provide to the command as needed by the executable that was registered.
+     */
+    public void executeCommand(String commandName, String[] args) {
         if (this.commands.containsKey(commandName)) {
+            logger.info(commandName + ' ' + Arrays.toString(args));
             this.commands.get(commandName).execute(args);
-            logger.info(commandString);
         } else {
             logger.warning(commandName + " is not a valid command.");
         }

src/main/java/nl/andrewlalis/ui/control/command/executables/ArchiveRepos.java

@@ -0,0 +1,30 @@
+package nl.andrewlalis.ui.control.command.executables;
+
+import nl.andrewlalis.git_api.GithubManager;
+
+import java.io.IOException;
+
+/**
+ * Represents the action archive all repositories with a certain substring in their name.
+ * It takes the following arguments:
+ *
+ * 1. Organization name
+ * 2. Access Token
+ * 3. Repo substring to archive by
+ */
+public class ArchiveRepos extends GithubExecutable {
+
+    @Override
+    protected boolean executeWithManager(GithubManager manager, String[] args) {
+        if (args.length < 1) {
+            return false;
+        }
+        try {
+            manager.archiveAllRepositories(args[0]);
+            return true;
+        } catch (IOException e) {
+            e.printStackTrace();
+            return false;
+        }
+    }
+}

src/main/java/nl/andrewlalis/ui/control/command/executables/GithubExecutable.java

@@ -0,0 +1,34 @@
+package nl.andrewlalis.ui.control.command.executables;
+
+import nl.andrewlalis.git_api.GithubManager;
+import nl.andrewlalis.ui.control.command.Executable;
+
+/**
+ * Represents an executable which interacts with github, and therefore needs access to a Github
+ * manager to execute.
+ *
+ * Requires two arguments:
+ * 1. The organization name.
+ * 2. The organization's access token.
+ */
+public abstract class GithubExecutable implements Executable {
+
+    @Override
+    public boolean execute(String[] args) {
+        if (args.length < 2) {
+            return false;
+        }
+        String[] extraArgs = new String[args.length-2];
+        System.arraycopy(args, 2, extraArgs, 0, args.length-2);
+        GithubManager manager = new GithubManager(args[0], args[1]);
+        return this.executeWithManager(manager, extraArgs);
+    }
+
+    /**
+     * Executes a command and provides a github manager with which to perform operations.
+     * @param manager The GithubManager used to perform actions on the repositories.
+     * @param args Any additional arguments provided to the executable.
+     * @return True if successful, or false otherwise.
+     */
+    protected abstract boolean executeWithManager(GithubManager manager, String[] args);
+}

src/main/java/nl/andrewlalis/ui/control/command/executables/ReadStudentsFileToDB.java

@@ -0,0 +1,36 @@
+package nl.andrewlalis.ui.control.command.executables;
+
+import nl.andrewlalis.model.StudentTeam;
+import nl.andrewlalis.model.database.Database;
+import nl.andrewlalis.ui.control.command.Executable;
+import nl.andrewlalis.util.FileUtils;
+
+import java.util.List;
+
+/**
+ * Execute this class to read students from a supplied filename and teamsize, and store their
+ * information in the database.
+ */
+public class ReadStudentsFileToDB implements Executable {
+
+    /**
+     * The database used to store the students.
+     */
+    private Database db;
+
+    public ReadStudentsFileToDB(Database db) {
+        this.db = db;
+    }
+
+
+    @Override
+    public boolean execute(String[] args) {
+        if (args.length < 2) {
+            return false;
+        }
+        String filename = args[0];
+        int teamSize = Integer.parseUnsignedInt(args[1]);
+        List<StudentTeam> teams = FileUtils.getStudentTeamsFromCSV(filename, teamSize);
+        return this.db.storeStudentTeams(teams);
+    }
+}

src/main/java/nl/andrewlalis/ui/control/listeners/CommandFieldKeyListener.java

@@ -15,7 +15,7 @@ public class CommandFieldKeyListener implements KeyListener {
     /**
      * This is responsible for parsing and running entered commands.
      */
-    CommandExecutor executor;
+    private CommandExecutor executor;
 
     public CommandFieldKeyListener(CommandExecutor executor) {
         this.executor = executor;

src/main/java/nl/andrewlalis/ui/view/InitializerApp.java

@@ -6,6 +6,7 @@ import nl.andrewlalis.ui.control.OutputTextHandler;
 
 import javax.swing.*;
 import java.awt.*;
+import java.util.logging.Level;
 import java.util.logging.Logger;
 
 /**
@@ -28,6 +29,13 @@ public class InitializerApp extends JFrame {
      */
     private OutputTextPane outputTextPane;
 
+    private JTextField organizationField = new JTextField();
+    private JTextField accessTokenField = new JTextField();
+    private JTextField assignmentsRepoField = new JTextField();
+    private JTextField teachingAssistantsField = new JTextField();
+    private JTextField studentRepoField = new JTextField();
+    private JTextField teamSizeField = new JTextField();
+
     /**
      * The executor responsible for performing meaningful actions.
      */
@@ -53,7 +61,9 @@ public class InitializerApp extends JFrame {
      */
     private void initLoggingHandler() {
         Logger logger = Logger.getGlobal();
-        logger.addHandler(new OutputTextHandler(this.outputTextPane));
+        OutputTextHandler handler = new OutputTextHandler(this.outputTextPane);
+        handler.setLevel(Level.FINE);
+        logger.addHandler(handler);
     }
 
     /**
@@ -68,12 +78,42 @@ public class InitializerApp extends JFrame {
 
         mainPanel.add(this.initCommandPanel(), BorderLayout.CENTER);
         mainPanel.add(this.initRepoPanel(), BorderLayout.WEST);
+        mainPanel.add(this.initGithubManagerPanel(), BorderLayout.EAST);
 
         this.setContentPane(mainPanel);
 
         this.initLoggingHandler();
     }
 
+    /**
+     * @return A JPanel containing input for all fields needed to connect to github, plus some commonly used buttons
+     * which perform actions, as shortcuts for command actions.
+     */
+    private JPanel initGithubManagerPanel() {
+        JPanel githubManagerPanel = new JPanel(new BorderLayout());
+
+        // Information input (org name, key, etc.)
+        JPanel infoInputPanel = new JPanel();
+        infoInputPanel.setLayout(new BoxLayout(infoInputPanel, BoxLayout.PAGE_AXIS));
+
+        infoInputPanel.add(generateTextFieldPanel("Organization Name", this.organizationField));
+        this.organizationField.setText("InitializerTesting");
+        infoInputPanel.add(generateTextFieldPanel("Access Token", this.accessTokenField));
+        this.accessTokenField.setText("d3699963f23cee85fe44c42f66057acc98c9ec7a");
+        infoInputPanel.add(generateTextFieldPanel("Assignments Repo Name", this.assignmentsRepoField));
+        this.assignmentsRepoField.setText("assignments_2018");
+        infoInputPanel.add(generateTextFieldPanel("TA-All Team Name", this.teachingAssistantsField));
+        this.teachingAssistantsField.setText("teaching-assistants");
+        infoInputPanel.add(generateTextFieldPanel("Student Repo Prefix", this.studentRepoField));
+        this.studentRepoField.setText("advoop_2018");
+        infoInputPanel.add(generateTextFieldPanel("Team Size", this.teamSizeField));
+        this.teamSizeField.setText("2");
+
+        githubManagerPanel.add(infoInputPanel, BorderLayout.NORTH);
+
+        return githubManagerPanel;
+    }
+
     /**
      * @return A JPanel containing the command prompt field and output text pane.
      */
@@ -83,7 +123,7 @@ public class InitializerApp extends JFrame {
         this.outputTextPane = new OutputTextPane();
         JScrollPane scrollPane = new JScrollPane(this.outputTextPane);
         scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
-        scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+        scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
         // Text enter field and label.
         JPanel textEnterPanel = new JPanel(new BorderLayout());
         textEnterPanel.setBorder(BorderFactory.createLoweredBevelBorder());
@@ -111,4 +151,18 @@ public class InitializerApp extends JFrame {
         return repoPanel;
     }
 
+    /**
+     * Generates a text input field panel.
+     * @param labelText The text for the label above the panel.
+     * @param textField A reference to the text field that is used in the panel.
+     * @return A JPanel containing the label and text field.
+     */
+    private JPanel generateTextFieldPanel(String labelText, JTextField textField) {
+        JPanel newPanel = new JPanel(new BorderLayout());
+        newPanel.add(new JLabel(labelText), BorderLayout.NORTH);
+        newPanel.add(textField);
+        newPanel.setBorder(BorderFactory.createEmptyBorder(5, 2, 5, 2));
+        return newPanel;
+    }
+
 }

src/main/java/nl/andrewlalis/util/FileUtils.java

@@ -47,13 +47,13 @@ public class FileUtils {
      * @return A list of student teams.
      */
     public static List<StudentTeam> getStudentTeamsFromCSV(String filename, int teamSize) {
-        List<StudentTeam> studentTeams = null;
+        List<StudentTeam> studentTeams;
         try {
             studentTeams = TeamGenerator.generateFromCSV(filename, teamSize);
             logger.fine("Teams created:\n" + studentTeams);
             return studentTeams;
         } catch (IOException | ArrayIndexOutOfBoundsException e) {
-            logger.severe("Unable to generate studentTeams from CSV file, exiting.");
+            logger.severe("Unable to generate studentTeams from CSV file, exiting. " + e.getMessage());
             System.exit(1);
             return null;
         }

src/main/resources/sql/insert/types.sql

@@ -10,8 +10,8 @@ VALUES (0, 'student_team'),
        (3, 'none');
 
 INSERT INTO teams (id, team_type_id)
-VALUES (0, 3), -- None team for all students or TA's without a team.
+VALUES (1000000, 3), -- None team for all students or TA's without a team.
-       (1, 2); -- Team for all teaching assistants.
+       (1000001, 2); -- Team for all teaching assistants.
 
 INSERT INTO error_types (id, name)
 VALUES (0, 'team_error'),